Example Prediction
SGGly predictions for the human T-cell antigen CD7 (UniProt P09564, AlphaFold2 model AF-P09564-F1). CD7 is a type I transmembrane protein with experimentally confirmed N-glycosylation sites in its extracellular domain. Two of the six sequon-Asn candidates are predicted as glycosylated (Asn45 and Asn96, both in a β-sheet context with high pLDDT confidence).
All asparagine (Asn/N) residues in the structure. Sites above the prediction threshold (0.5) are labelled Glycosylated.
| # | Entry | Chain | Position | Residue | Score | Candidate Status |
|---|---|---|---|---|---|---|
| 1 | P09564 | A | 45 | N | 0.9905 | Glycosylated |
| 2 | P09564 | A | 96 | N | 0.9912 | Glycosylated |
| 3 | P09564 | A | 121 | N | 0.0009 | Not Glycosylated |
| 4 | P09564 | A | 215 | N | 0.0008 | Not Glycosylated |
| 5 | P09564 | A | 231 | N | 0.0016 | Not Glycosylated |
| 6 | P09564 | A | 237 | N | 0.0011 | Not Glycosylated |
Predicted Site Features
Structural context from DSSP and AlphaFold2 pLDDT for each predicted glycosylation site. Sites are highlighted red in the viewer.