Trajectory representation for the first non-trivial mode of the molecule motion based on Normal Mode Analysis.


Porcupine plots
Vector field representation of molecule for the first non-trivial mode of the molecule motion based on Normal Mode Analysis.



Dynamical Cross-Correlation Map (DCCM)
All modes were used to calculated the residue cross-correlation.
Correlation map revealing correlated (red) and anti-correlated (blue) regions in the protein structure.
Assuming: Cab = Correlation between residues a and b
If Cab = 1 the fluctuations of residues a and b are completely correlated (same period and same phase), if Cab = -1 the fluctuations of residues a and b are completely anticorrelated (same period and opposite phase), and if Cab = 0 the fluctuations of a and b are not correlated.

Correlated Residues



Anti-correlated Residues

