COVID-3D | ORF7a

3D Structure

Structure

APO I

Background info_outlineWhite
RepresentationCartoon
Color Scheme info_outlineSecondary Structure
Pockets info_outline#1 - Volume 132.096 Å³

                                                
                                                    Pocket info_outline
                                                
                                                    Surface info_outline
                                                
Fragment Hotspots info_outline:
                                                
                                                    Acceptor
                                                
                                                    Donor
                                                
                                                    Apolar

                                                
                                                    COVID-19 Variants info_outline
                                                
                                                    Variant Frequency info_outline

Mutations from SARS

Mutations from Bat RaTG13

                                            refresh Reset
                                        
                                            loopSpin
                                        
                                            camera_altScreenshot
                                        
                                            fullscreenFullscreen
                                        
                                            helpHelp
                                        
Interactive viewer help
                                                        Mouse Controls
                                                        
                                                                    Command
                                                                    Action
                                                                
                                                                    click + drag
                                                                    Rotate
                                                                
                                                                    right click + drag
                                                                    Translate
                                                                
                                                                    mouse wheel
                                                                    Zoom
                                                                
                                                                    click on structure
                                                                    Center on clicked region
                                                                
                                                Close

Command	Action
click + drag	Rotate
right click + drag	Translate
mouse wheel	Zoom
click on structure	Center on clicked region

Sequence

Position :

0

Zoom :

x 1

Mutational Tolerance (Missense Tolerance Ratio)

Horizontal lines show gene-specific MTR percentiles 5th, 25th, 50th, and neutrality (MTR = 1.0)

Mutations Analysis Saturation Mutagenesis

                                            info_outline
                                        
                                                    Residue Properties
                                                
                                                    Stability Scores
                                                
                                                    PSSM Scores
                                                
                                                    AAindex
                                                
                                                    Clade Frequency
                                                
                                                    Contacts

SARS-CoV2 Circulating Variants

Show entries

Search:

Position	AA from	AA to	Chain	Frequency (%)	Depth (Å)	Phi (°)	Psi (°)	RSA (%)	SST	MTR Score	Consurf Score	ΔAtomic Fluctuation (Å)	ΔEnergy Deformation (kcal/mol)	ΔΔG_mCSM^stability	ΔΔG_DynaMut^stability	ΔΔG_DUET^stability	ΔΔG_SDM^stability	ΔΔG_ENCoM^stability	ΔΔS_ENCoM^vib	Hydrophobics	Positives	Negatives	Acceptors	Donnors	Aromatics	Sulfurs	Neutral	Details

Position	AA from	AA to	Chain	Frequency (%)	Depth (Å)	Phi (°)	Psi (°)	RSA (%)	SST	MTR Score	Consurf Score	ΔAtomic Fluctuation (Å)	ΔEnergy Deformation (kcal/mol)	ΔΔG_mCSM^stability	ΔΔG_DynaMut^stability	ΔΔG_DUET^stability	ΔΔG_SDM^stability	ΔΔG_ENCoM^stability	ΔΔS_ENCoM^vib	Hydrophobics	Positives	Negatives	Acceptors	Donnors	Aromatics	Sulfurs	Neutral	Details
Loading...

Showing 0 to 0 of 0 entries

Mutations from SARS

Show entries

Search:

Position	AA from	AA to	Chain	Frequency (%)	Depth (Å)	Phi (°)	Psi (°)	RSA (%)	SST	MTR Score	Consurf Score	ΔAtomic Fluctuation (Å)	ΔEnergy Deformation (kcal/mol)	ΔΔG_mCSM^stability	ΔΔG_DynaMut^stability	ΔΔG_DUET^stability	ΔΔG_SDM^stability	ΔΔG_ENCoM^stability	ΔΔS_ENCoM^vib	Hydrophobics	Positives	Negatives	Acceptors	Donnors	Aromatics	Sulfurs	Neutral	Details

Position	AA from	AA to	Chain	Frequency (%)	Depth (Å)	Phi (°)	Psi (°)	RSA (%)	SST	MTR Score	Consurf Score	ΔAtomic Fluctuation (Å)	ΔEnergy Deformation (kcal/mol)	ΔΔG_mCSM^stability	ΔΔG_DynaMut^stability	ΔΔG_DUET^stability	ΔΔG_SDM^stability	ΔΔG_ENCoM^stability	ΔΔS_ENCoM^vib	Hydrophobics	Positives	Negatives	Acceptors	Donnors	Aromatics	Sulfurs	Neutral	Details
Loading...

Showing 0 to 0 of 0 entries

Mutations from Bat RaTG13

Show entries

Search:

Position	AA from	AA to	Chain	Frequency (%)	Depth (Å)	Phi (°)	Psi (°)	RSA (%)	SST	MTR Score	Consurf Score	ΔAtomic Fluctuation (Å)	ΔEnergy Deformation (kcal/mol)	ΔΔG_mCSM^stability	ΔΔG_DynaMut^stability	ΔΔG_DUET^stability	ΔΔG_SDM^stability	ΔΔG_ENCoM^stability	ΔΔS_ENCoM^vib	Hydrophobics	Positives	Negatives	Acceptors	Donnors	Aromatics	Sulfurs	Neutral	Details

Position	AA from	AA to	Chain	Frequency (%)	Depth (Å)	Phi (°)	Psi (°)	RSA (%)	SST	MTR Score	Consurf Score	ΔAtomic Fluctuation (Å)	ΔEnergy Deformation (kcal/mol)	ΔΔG_mCSM^stability	ΔΔG_DynaMut^stability	ΔΔG_DUET^stability	ΔΔG_SDM^stability	ΔΔG_ENCoM^stability	ΔΔS_ENCoM^vib	Hydrophobics	Positives	Negatives	Acceptors	Donnors	Aromatics	Sulfurs	Neutral	Details
Loading...

Showing 0 to 0 of 0 entries

Normal Mode Analysis

                                            Porcupine Plots info_outline

Modes Visualisation info_outline

Deformation Energy info_outline
                                                
Atomic Fluctuation info_outline

Molecular Dynamics

Downloads

Protein Structure Mutations

ORF7a (Uniprot: P0DTC7 - GenBank: QHD43421)

Interactive viewer help

Mouse Controls

Interactive sequence viewer help

Mutational Tolerance (Missense Tolerance Ratio)

SARS-CoV2 Circulating Variants

Mutations from SARS info_outline

Mutations from Bat RaTG13 info_outline

Porcupine Plots info_outline

Modes Visualisation info_outline

Deformation Energy info_outline

Atomic Fluctuation info_outline

Mutations from SARS

Mutations from Bat RaTG13

Porcupine Plots

Modes Visualisation

Deformation Energy

Atomic Fluctuation